We explore the quench dynamics of a binary Bose–Einstein condensate crossing the miscibility–immiscibility threshold and vice versa, both within and in particular beyond the mean-field approximation. Increasing the interspecies repulsion leads to the filamentation of the density of each species, involving shorter wavenumbers and longer spatial scales in the many-body (MB) approach. These filaments appear to be strongly correlated and exhibit domain-wall structures. Following the reverse quench process multiple dark–antidark solitary waves are spontaneously generated and subsequently found to decay in the MB scenario. We simulate single-shot images to connect our findings to possible experimental realizations. Finally, the growth rate of the variance of a sample of single-shots probes the degree of entanglement inherent in the system.